rs6011927 chr20:63614473 C>G
- Sequence
agtggaccgtggtctagcggtagc[C/G]tcagtgtcaaggaaaaacacccgc
- ASB in cell types
- GM17942 (lymphoblastoid cell) MS-1 (Small cell lung carcinoma) WA01 (H1, human embryonic stem cells) GM18526 (B – cells Lymphoblastoid Cell Lines)
- ASB for transcription factors
- STAG1_HUMAN TIF1B_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (C) ASB
-log10 FDR of Alt (G) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| STAG1_HUMAN | 1.84 | -0.11 | 1.22 | n/a | n/a | |||
| TIF1B_HUMAN | 1.17 | 0.23 | 1.00 | n/a | n/a |
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Motif analysis
No data available
Genetic associations
GTEx eQTL Esophagus_Gastroesophageal_Junction, Esophagus_Muscularis, Lung, Muscle_Skeletal, Skin_Sun_Exposed_Lower_leg, Testis, Whole_Blood