rs6012580 chr20:49009415 A>C
- Sequence
aatgagtcgaggtcgctctactgc[A/C]ttccagcctgggcaacagagcaag
- ASB in cell types
- HepG2 (hepatoblastoma)
- ASB for transcription factors
- RARA_HUMAN TEAD1_HUMAN FOXK2_HUMAN SOX13_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (A) ASB
-log10 FDR of Alt (C) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| RARA_HUMAN | 2.48 | -3.90 | 1.33 | n/a | No Hit | |||
| TEAD1_HUMAN | 2.20 | -4.04 | 1.50 | -8.24 | Concordant | |||
| FOXK2_HUMAN | 2.19 | -1.71 | 1.00 | n/a | n/a | |||
| SOX13_HUMAN | 1.70 | -2.94 | 1.50 | n/a | n/a |
Items per page:
1 – 4 of 4
Motif analysis
