rs6012931 chr20:50443129 C>T
- Sequence
aggcgcctgggatctatcgtgatg[C/T]gagaacagcaaggtacagaacaat
- ASB in cell types
- VCaP (prostate carcinoma) PC3(bone mets prostate adenocarcinoma)
- ASB for transcription factors
- ANDR_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (C) ASB
-log10 FDR of Alt (T) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| ANDR_HUMAN | 0.58 | 2.53 | 1.68 | 1.72 | Weak Concordant |
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Motif analysis
Genetic associations
GRASP advanced age-related macular degeneration (choroidal neovascularization) vs. no amd, college completion, fasting blood glucose, ldl cholesterol, lung function, ratio of forced expiratory volume in 1 second (fev1) to forced vital capacity (fvc) (fev1/fvc) ratio percent predicted (in nonasthmatic participants), parkinsons disease, serum creatinine, years of education