rs6015971 chr20:38863300 C>T
- Sequence
gacctgatgcacctcgtacttccc[C/T]tcctgtctgtgaagcatgaacttg
- ASB in cell types
- K562 (myelogenous leukemia)
- ASB for transcription factors
- GABP1_HUMAN NCOR1_HUMAN NR2C1_HUMAN MTG16_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (C) ASB
-log10 FDR of Alt (T) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| GABP1_HUMAN | n/a | 3.39 | 2.00 | n/a | n/a | |||
| NCOR1_HUMAN | -0.19 | 2.57 | 2.00 | n/a | n/a | |||
| NR2C1_HUMAN | -1.94 | 2.72 | 2.00 | n/a | No Hit | |||
| MTG16_HUMAN | -1.31 | 2.35 | 2.00 | n/a | n/a |
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Motif analysis
No data available
Genetic associations
GTEx eQTL Colon_Sigmoid, Colon_Transverse, Esophagus_Gastroesophageal_Junction, Esophagus_Muscularis