rs6017882 chr20:37336294 C>T
- Sequence
actcactgctcacttgtctgtccc[C/T]agctccagcacaggagctgacatg
- ASB in cell types
- GM12878 (female B-cells lymphoblastoid cell line)
- ASB for transcription factors
- FOXK2_HUMAN IKZF2_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (C) ASB
-log10 FDR of Alt (T) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| FOXK2_HUMAN | 3.17 | n/a | 1.50 | n/a | n/a | |||
| IKZF2_HUMAN | 1.78 | -1.24 | 1.00 | n/a | n/a |
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Motif analysis
No data available
Genetic associations
GRASP 2 hour glucose, diastolic blood pressure (dbp), height, ldl cholesterol, total cholesterol, total cholesterol change with statins