rs6018494 chr20:47469000 G>A
- Sequence
ctgagtagctgagactacaggcac[G/A]tgcaagcatgcccaggtaatgggg
- ASB in cell types
- K562 (myelogenous leukemia) GM12878 (female B-cells lymphoblastoid cell line)
- ASB for transcription factors
- BHE40_HUMAN NFXL1_HUMAN ARI1B_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (G) ASB
-log10 FDR of Alt (A) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| BHE40_HUMAN | 3.31 | n/a | 1.50 | -5.45 | Concordant | |||
| NFXL1_HUMAN | 2.98 | -5.49 | 2.00 | n/a | n/a | |||
| ARI1B_HUMAN | n/a | 1.77 | 2.00 | n/a | n/a |
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Motif analysis
