rs6018687 chr20:47785026 T>C
- Sequence
atggccggcccaggcgcgctcccc[T/C]acccggggccgcctgtgctcggtg
- ASB in cell types
- MCF7 (Invasive ductal breast carcinoma) BEAS-2B (bronchial epithelium)
- ASB for transcription factors
- ESR1_HUMAN SMCA4_HUMAN GCR_HUMAN HDAC1_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (T) ASB
-log10 FDR of Alt (C) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| ESR1_HUMAN | -0.41 | 2.50 | 4.36 | n/a | No Hit | |||
| SMCA4_HUMAN | -5.96 | 2.52 | 3.00 | n/a | n/a | |||
| GCR_HUMAN | -0.10 | 1.25 | 2.00 | n/a | No Hit | |||
| HDAC1_HUMAN | n/a | 3.40 | 3.00 | n/a | n/a | |||
| BRD4_HUMAN | 0.37 | 2.50 | 1.83 | n/a | n/a |
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