rs6020752 chr20:50794732 A>G

Sequence
caacaatctggttggaaccaccta[A/G]caaacatcaaaagatcctgatgcc
ASB in cell types
MCF7 (Invasive ductal breast carcinoma) GM12878 (female B-cells lymphoblastoid cell line)
ASB for transcription factors
RAD21_HUMAN Z512B_HUMAN ZFX_HUMAN

Color scale

color scale ref
-log10 FDR of Ref (A) ASB
color scale alt
-log10 FDR of Alt (G) ASB

Details

Uniprot ID
Effect size Ref
Effect size Alt
FDR Ref
FDR Alt
Mean BAD
Motif fold change
Motif concordance
RAD21_HUMAN 0.38 2.33 0.686.7·10-4 1.69 n/a n/a
Z512B_HUMAN n/a 2.73 1.009.0·10-3 4.00 n/a n/a
ZFX_HUMAN -0.31 1.78 0.980.03 2.75 n/a No Hit
Items per page:
1 – 3 of 3

Motif analysis

No data available

Genetic associations

GRASP fasting insulin homa-ir tardive dyskinesia
GTEx eQTL Cells_Cultured_fibroblasts Testis Whole_Blood

Download