rs6023004 chr20:54183547 C>T

Sequence
gttttgctcttaagctcccaatat[C/T]tggacactgttatggatatcttat
ASB in cell types
MCF7 (Invasive ductal breast carcinoma)
ASB for transcription factors
P53_HUMAN HES1_HUMAN ZBT40_HUMAN
Search SNPs nearby
View in UCSC Genome Browser
View in PheLiGe

Color scale

color scale ref
-log10 FDR of Ref (C) ASB
color scale alt
-log10 FDR of Alt (T) ASB

Details

Uniprot ID
Effect size Ref
Effect size Alt
FDR Ref
FDR Alt
Mean BAD
Motif fold change
Motif concordance
P53_HUMAN n/a 3.60 1.003.7·10-8 4.00 n/a No Hit
HES1_HUMAN n/a 3.18 1.000.01 6.00 n/a n/a
ZBT40_HUMAN 0.37 2.65 0.730.02 3.50 n/a n/a
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Motif analysis

No data available

Genetic associations

GTEx eQTL Brain_Anterior_cingulate_cortex_BA24,  Brain_Cortex,  Brain_Nucleus_accumbens_basal_ganglia,  Esophagus_Mucosa

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