rs6023059 chr20:38109369 T>C
- Sequence
tttgctgatacagaacaatctgtg[T/C]aaactcagagagtgacagcctgag
- ASB in cell types
- LNCaP (prostate carcinoma) VCaP (prostate carcinoma) 22RV1 (prostate carcinoma) LNCaP95
- ASB for transcription factors
- ANDR_HUMAN HNF4G_HUMAN TBP_HUMAN GCR_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (T) ASB
-log10 FDR of Alt (C) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| ANDR_HUMAN | 0.43 | 2.25 | 2.02 | n/a | No Hit | |||
| HNF4G_HUMAN | -4.09 | 2.57 | 1.50 | n/a | No Hit | |||
| TBP_HUMAN | -1.03 | 1.83 | 1.00 | n/a | No Hit | |||
| GCR_HUMAN | 0.85 | 1.79 | 1.29 | 3.16 | Concordant | |||
| RARA_HUMAN | 1.95 | -1.73 | 1.00 | n/a | No Hit |
Items per page:
1 – 5 of 9
Motif analysis
Genetic associations
GRASP bipolar disorder, bipolar disorder and schizophrenia, hdl cholesterol, ldl cholesterol, ldl cholesterol change with statins, mitral annular calcium, parkinsons disease, schizophrenia, systolic blood pressure (sbp), urinary albumin-to-creatinine ratio
GTEx eQTL Adipose_Subcutaneous, Adrenal_Gland, Cells_Cultured_fibroblasts, Heart_Left_Ventricle, Lung, Muscle_Skeletal, Spleen