rs6023064 chr20:38110188 A>G
- Sequence
ccaaactctcttgatatttgccat[A/G]gttgcctttgaaacctcaaaaagg
- ASB in cell types
- K562 (myelogenous leukemia) HCASMC (Human coronary artery smooth muscle cells) HS-ES-2M (Epithelioid sarcoma)
- ASB for transcription factors
- TCF21_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (A) ASB
-log10 FDR of Alt (G) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| TCF21_HUMAN | 2.95 | n/a | 2.00 | n/a | n/a |
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Motif analysis
No data available
Genetic associations
GRASP college completion, neuroblastoma (brain cancer), obesity with early age of onset (age >2), resistance to kuru in aged women despite likely exposure
GTEx eQTL Adipose_Subcutaneous, Adipose_Visceral_Omentum, Adrenal_Gland, Artery_Aorta, Artery_Tibial, Brain_Caudate_basal_ganglia, Brain_Cerebellar_Hemisphere, Brain_Cerebellum, Brain_Cortex, Brain_Putamen_basal_ganglia, Breast_Mammary_Tissue, Esophagus_Mucosa, Esophagus_Muscularis, Heart_Atrial_Appendage, Heart_Left_Ventricle, Lung, Muscle_Skeletal, Nerve_Tibial, Ovary, Pancreas, Pituitary, Prostate, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Spleen, Stomach, Testis, Thyroid, Whole_Blood