rs6025417 chr20:57169849 G>C
- Sequence
tggctcactgcaacctccacctct[G/C]gggttcaagcaattctcctgcctc
- ASB in cell types
- MCF7 (Invasive ductal breast carcinoma)
- ASB for transcription factors
- SIX4_HUMAN Z512B_HUMAN NFIB_HUMAN ESR1_HUMAN
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-log10 FDR of Ref (G) ASB
-log10 FDR of Alt (C) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| SIX4_HUMAN | n/a | 4.76 | 4.00 | n/a | n/a | |||
| Z512B_HUMAN | n/a | 4.28 | 4.00 | n/a | n/a | |||
| NFIB_HUMAN | n/a | 3.14 | 6.00 | n/a | n/a | |||
| ESR1_HUMAN | n/a | 3.33 | 5.00 | n/a | No Hit | |||
| MAZ_HUMAN | n/a | 3.65 | 4.00 | n/a | No Hit |
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Motif analysis
Genetic associations
GTEx eQTL Brain_Cerebellum, Brain_Cortex, Nerve_Tibial, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg