rs6025590 chr20:57495449 A>G
- Sequence
cactgcatctattttggtatcaaa[A/G]gcactaactgcacttgaggaccag
- ASB in cell types
- MCF7 (Invasive ductal breast carcinoma) MCF7L-P(immortalized breast epithelial cell line) T47D (invasive ductal carcinoma) erythroid progenitors
- ASB for transcription factors
- SIN3A_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (A) ASB
-log10 FDR of Alt (G) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| SIN3A_HUMAN | n/a | 3.06 | 2.50 | n/a | n/a |
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Motif analysis
No data available
Genetic associations
GRASP alzheimers disease, bipolar disorder in alcoholics, body mass index (bmi), eur students <30 delayed story recall, ldl cholesterol, lp-pla2 activity, major depressive disorder, sedentary and light activity (min/d) by accelerometry in children, suicide attempts in bipolar disorder, suicide attempts in mood disorder patients, total cholesterol, waist hip ratio
GTEx eQTL Artery_Aorta, Colon_Sigmoid, Colon_Transverse, Esophagus_Muscularis, Spleen, Testis, Thyroid