rs6030839 chr20:43405048 A>C
- Sequence
atgggggaattcccttagtaggca[A/C]tttttgctccagagctcccccgtc
- ASB in cell types
- IPSC-derived bipolar neuron H929 (plasma cell myeloma) bipolar neuron GM12878 (female B-cells lymphoblastoid cell line)
- ASB for transcription factors
- CTCF_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (A) ASB
-log10 FDR of Alt (C) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| CTCF_HUMAN | 1.03 | 0.26 | 1.38 | n/a | No Hit |
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Motif analysis
No data available
Genetic associations
GRASP cystatin c in serum, fasting insulin, homa-ir, microalbuminuria, obesity with early age of onset (age >2), paternal transmission distortion, urinary albumin-to-creatinine ratio, waist hip ratio