rs6031462 chr20:44217841 C>T
- Sequence
agttaaaagtttttaaaacttaaa[C/T]atctctatgtataccacaaaatag
- ASB in cell types
- MOLT-4 (Adult T acute lymphoblastic leukemia) GM19238 (female B-cells lymphoblastoid cell lines)
- ASB for transcription factors
- CDK9_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (C) ASB
-log10 FDR of Alt (T) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| CDK9_HUMAN | 1.07 | -0.86 | 1.00 | n/a | n/a |
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Motif analysis
No data available
Genetic associations
GRASP fasting insulin, hdl cholesterol, obesity with early age of onset (age >2), resistance to kuru in aged women despite likely exposure
GTEx eQTL Artery_Aorta, Artery_Tibial, Cells_Cultured_fibroblasts, Cells_EBV-transformed_lymphocytes, Esophagus_Mucosa, Esophagus_Muscularis, Lung, Nerve_Tibial, Pancreas, Prostate, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Small_Intestine_Terminal_Ileum, Spleen, Testis, Thyroid, Whole_Blood