rs6031955 chr20:45052922 T>C
- Sequence
tggctttttactgaagtagtcctg[T/C]cgagcagtttctggtgagaagact
- ASB in cell types
- SYO-1(Biphasic synovial sarcoma)
- ASB for transcription factors
- SSXT_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (T) ASB
-log10 FDR of Alt (C) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| SSXT_HUMAN | -1.72 | 1.91 | 1.00 | n/a | n/a |
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Motif analysis
No data available
Genetic associations
GRASP bipolar disorder, bipolar disorder in alcoholics, hdl cholesterol change with statins, major depressive disorder
GTEx eQTL Adipose_Subcutaneous, Adrenal_Gland, Cells_Cultured_fibroblasts, Esophagus_Muscularis, Heart_Atrial_Appendage, Lung, Minor_Salivary_Gland, Nerve_Tibial, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Thyroid, Whole_Blood