rs6036195 chr20:22727856 G>T
- Sequence
ttgtgcactctggcagcagggggc[G/T]gagagtatgtggctccaggaacaa
- ASB for transcription factors
- CTCF_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (G) ASB
-log10 FDR of Alt (T) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| CTCF_HUMAN | 1.75 | -0.55 | 1.50 | -4.87 | Concordant |
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Motif analysis
Genetic associations
GRASP hippocampal volume, total cerebral volume, white matter hyperintensities in alzheimers disease patients