rs6036532 chr20:23782452 C>T
- Sequence
aatgtggcagataaaccacaaagc[C/T]acagggcaattcctgtgcctgcag
- ASB in cell types
- 2588 (Lymphoblastoid Cell Lines) MS-1 (Small cell lung carcinoma) GM02630 (Fanconi anemi)
- ASB for transcription factors
- CTCF_HUMAN RAD21_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (C) ASB
-log10 FDR of Alt (T) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| CTCF_HUMAN | 1.77 | 0.81 | 1.79 | n/a | No Hit | |||
| RAD21_HUMAN | 1.57 | -0.95 | 1.44 | n/a | n/a |
Items per page:
1 – 2 of 2
Motif analysis
No data available
Genetic associations
GTEx eQTL Adipose_Visceral_Omentum, Esophagus_Muscularis, Lung, Nerve_Tibial, Pancreas, Prostate, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Stomach