rs6039924 chr20:10430320 T>G

Sequence
acaactggctgtgtggccttggat[T/G]agtcacttaatctcattgtgcttc
ASB in cell types
HepG2 (hepatoblastoma) MCF7 (Invasive ductal breast carcinoma)
ASB for transcription factors
SOX13_HUMAN FOXA2_HUMAN FOS_HUMAN
Search SNPs nearby
View in UCSC Genome Browser
View in PheLiGe

Color scale

color scale ref
-log10 FDR of Ref (T) ASB
color scale alt
-log10 FDR of Alt (G) ASB

Details

Uniprot ID
Effect size Ref
Effect size Alt
FDR Ref
FDR Alt
Mean BAD
Motif fold change
Motif concordance
SOX13_HUMAN n/a 2.92 1.005.3·10-6 1.50 n/a n/a
FOXA2_HUMAN -1.09 2.44 1.004.8·10-4 1.39 n/a No Hit
FOS_HUMAN -4.57 2.81 1.006.5·10-4 1.50 n/a n/a
Items per page:
1 – 3 of 3

Motif analysis

No data available

Genetic associations

GRASP infant head circumference,  parkinsons disease
GTEx eQTL Brain_Anterior_cingulate_cortex_BA24,  Brain_Caudate_basal_ganglia,  Colon_Transverse,  Esophagus_Mucosa,  Nerve_Tibial,  Whole_Blood

Download