rs6047580 chr20:21693526 G>A
- Sequence
attctgctacagcaccccctcctg[G/A]ttcccagaggtaaatgccctgcca
- ASB in cell types
- GM12892 (female B-cells lymphoblastoid cell line) GM12878 (female B-cells lymphoblastoid cell line) GM02610 (Lymphoblastoid Cell Lines) GM18951 (B-cells Lymphoblastoid Cell Lines)
- ASB for transcription factors
- CTCF_HUMAN STAG1_HUMAN
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-log10 FDR of Ref (G) ASB
-log10 FDR of Alt (A) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| CTCF_HUMAN | 3.93 | -2.86 | 1.11 | -3.17 | Concordant | |||
| STAG1_HUMAN | 2.31 | -2.17 | 1.00 | n/a | n/a |
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Motif analysis
