rs6048797 chr20:23441984 G>A
- Sequence
caatgcagactgtcccacaggctg[G/A]ctcagtgaggcacttctaccacaa
- ASB in cell types
- glioblastoma cells WA09 (embryonic stem cells) THP-1 (acute monocytic leukemia)
View in PheLiGe Color scale
-log10 FDR of Ref (G) ASB
-log10 FDR of Alt (A) ASB
Details
Transcription factors
Cell types
Cell type | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | |
|---|---|---|---|---|---|---|
| glioblastoma cells | 1.98 | n/a | 2.00 | |||
| WA09 (embryonic stem cells) | 1.71 | -0.27 | 1.44 | |||
| THP-1 (acute monocytic leukemia) | 0.68 | 0.53 | 1.00 |
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Motif analysis
No data available
Genetic associations
GTEx eQTL Cells_Cultured_fibroblasts, Esophagus_Muscularis, Heart_Left_Ventricle, Muscle_Skeletal, Testis