rs6048998 chr20:23693278 G>A
- Sequence
gaactcgggctgctggttgctgca[G/A]ccagggatccgtctgagtccctgg
- ASB in cell types
- MDA-MB-231-1833 (breast cancer cells, bone-tropic metastatic line) MDA-MB-231p27CK-DD (breast cancer cells, phosphimimetic p27 cell line) MDA-MB-231 (breast adenocarcinoma)
- ASB for transcription factors
- CDN1B_HUMAN JUN_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (G) ASB
-log10 FDR of Alt (A) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| CDN1B_HUMAN | 2.69 | -1.91 | 2.00 | n/a | n/a | |||
| JUN_HUMAN | 1.84 | -0.20 | 2.00 | n/a | No Hit |
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Motif analysis
No data available
Genetic associations
GRASP advanced age-related macular degeneration, advanced age-related macular degeneration (choroidal neovascularization) vs. no amd, college completion, cystatin c in serum, refractive error, serum cystatin c estimated glomerular filtration rate (egfr)