rs6049288 chr20:2470805 G>T
- Sequence
cggaaatgcagcaccacgtaaaat[G/T]cggtcgggtagaaacctacttccg
- ASB in cell types
- 22RV1 (prostate carcinoma) breast tumor neutrophils from periferal blood
- ASB for transcription factors
- ESR1_HUMAN KDM6A_HUMAN CTCF_HUMAN RAD21_HUMAN
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-log10 FDR of Ref (G) ASB
-log10 FDR of Alt (T) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| ESR1_HUMAN | 3.07 | 0.19 | 1.75 | n/a | No Hit | |||
| KDM6A_HUMAN | 2.18 | -0.64 | 1.00 | n/a | n/a | |||
| CTCF_HUMAN | 0.98 | 0.24 | 1.02 | n/a | No Hit | |||
| RAD21_HUMAN | 2.71 | 1.08 | 1.25 | n/a | n/a |
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