rs6049290 chr20:2470858 C>T
- Sequence
agctcactagccctggagttccgg[C/T]cccggagcggagcttctgccgagc
- ASB in cell types
- adult erythroblasts breast tumor 22RV1 (prostate carcinoma) primary B-CLL cells
- ASB for transcription factors
- HCFC1_HUMAN ESR1_HUMAN CTCF_HUMAN GABPA_HUMAN
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-log10 FDR of Ref (C) ASB
-log10 FDR of Alt (T) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| HCFC1_HUMAN | 2.37 | n/a | 2.00 | n/a | n/a | |||
| ESR1_HUMAN | 3.46 | 0.48 | 1.75 | n/a | No Hit | |||
| CTCF_HUMAN | 1.19 | 0.60 | 1.02 | n/a | No Hit | |||
| GABPA_HUMAN | -1.31 | 1.18 | 1.25 | 0.16 | Weak Concordant |
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Motif analysis
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Adipose_Visceral_Omentum, Esophagus_Mucosa, Lung, Spleen, Thyroid, Whole_Blood