rs605066 chr6:139508529 C>T
- Sequence
tcttggtgttaaaaataatattta[C/T]ataggcaatctgtggagagagaaa
- ASB in cell types
- HepG2 (hepatoblastoma)
- ASB for transcription factors
- FOXA2_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (C) ASB
-log10 FDR of Alt (T) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| FOXA2_HUMAN | 3.06 | n/a | 2.00 | -3.26 | Concordant |
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Motif analysis
Genetic associations
GRASP 2 hour glucose, adiponectin levels, advanced age-related macular degeneration, coronary artery disease (cad), diastolic blood pressure (dbp), hdl cholesterol, ldl cholesterol, mean corpuscular hemoglobin (mch), mean corpuscular hemoglobin concentration (mchc), mean corpuscular volume (mcv), serum creatinine, systolic blood pressure (sbp), triglycerides, waist hip ratio