rs6051524 chr20:372073 A>G
- Sequence
tgggcagttatccagactgaacat[A/G]taatccccttccttctctggcctt
- ASB in cell types
- MV-4-11 (Childhood acute monocytic leukemia) HUVEC-C (HUVEC, umbilical vein endothelial cells) HCT-116 (colon carcinoma)
- ASB for transcription factors
- BRD4_HUMAN CEBPB_HUMAN SUH_HUMAN ERCC3_HUMAN
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-log10 FDR of Ref (A) ASB
-log10 FDR of Alt (G) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| BRD4_HUMAN | -0.28 | 1.64 | 1.57 | n/a | n/a | |||
| CEBPB_HUMAN | -0.04 | 1.10 | 1.31 | n/a | No Hit | |||
| SUH_HUMAN | 1.59 | 1.02 | 1.33 | n/a | No Hit | |||
| ERCC3_HUMAN | n/a | 2.19 | 1.00 | n/a | n/a |
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Motif analysis
No data available
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Adipose_Visceral_Omentum, Adrenal_Gland, Artery_Aorta, Artery_Coronary, Artery_Tibial, Brain_Amygdala, Brain_Anterior_cingulate_cortex_BA24, Brain_Caudate_basal_ganglia, Brain_Cerebellar_Hemisphere, Brain_Cerebellum, Brain_Cortex, Brain_Frontal_Cortex_BA9, Brain_Hippocampus, Brain_Hypothalamus, Brain_Nucleus_accumbens_basal_ganglia, Brain_Putamen_basal_ganglia, Brain_Substantia_nigra, Breast_Mammary_Tissue, Cells_Cultured_fibroblasts, Colon_Sigmoid, Esophagus_Gastroesophageal_Junction, Esophagus_Mucosa, Esophagus_Muscularis, Heart_Atrial_Appendage, Heart_Left_Ventricle, Lung, Muscle_Skeletal, Nerve_Tibial, Ovary, Pituitary, Prostate, Stomach, Testis, Thyroid, Whole_Blood