rs6052093 chr20:3818743 A>C
- Sequence
ggagctgtgccaacatcactcccc[A/C]gcctcgtagctgaggccccacagt
- ASB in cell types
- 2588 (Lymphoblastoid Cell Lines) HCASMC (Human coronary artery smooth muscle cells) foreskin keratinocyte
- ASB for transcription factors
- CTCF_HUMAN TCF21_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (A) ASB
-log10 FDR of Alt (C) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| CTCF_HUMAN | 1.04 | 0.17 | 1.46 | n/a | No Hit | |||
| TCF21_HUMAN | 2.35 | -1.27 | 2.00 | n/a | n/a |
Items per page:
1 – 2 of 2
Motif analysis
No data available
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Adipose_Visceral_Omentum, Brain_Caudate_basal_ganglia, Brain_Cerebellar_Hemisphere, Brain_Cerebellum, Brain_Nucleus_accumbens_basal_ganglia, Breast_Mammary_Tissue, Cells_Cultured_fibroblasts, Esophagus_Mucosa, Nerve_Tibial, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Spleen, Testis, Thyroid, Whole_Blood