rs6052281 chr20:4065467 T>G
- Sequence
atgtgtactagtacacatctttct[T/G]tattatgcaacgtaccttggagat
- ASB for transcription factors
- CEBPA_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (T) ASB
-log10 FDR of Alt (G) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| CEBPA_HUMAN | n/a | 2.12 | 2.00 | n/a | No Hit |
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Motif analysis
No data available
Genetic associations
GRASP pci (rim area, superotemporal rim area, inferotemporal rim area, rim-to-disc area ratio, and linear cup-to-disc ratio) , college completion, inferotemporal rim area, major depressive disorder (broad definition), major depressive disorder (broad definition) (females)
GTEx eQTL Adipose_Subcutaneous, Cells_Cultured_fibroblasts, Colon_Sigmoid, Muscle_Skeletal, Nerve_Tibial, Skin_Sun_Exposed_Lower_leg, Thyroid