rs6053196 chr20:5202679 G>A
- Sequence
tgtttgtttgcaaagggctgctat[G/A]ttgagaacagactacagtgggcca
- ASB in cell types
- HepG2 (hepatoblastoma)
- ASB for transcription factors
- TEAD3_HUMAN PPARG_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (G) ASB
-log10 FDR of Alt (A) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| TEAD3_HUMAN | 3.10 | -2.84 | 1.00 | n/a | n/a | |||
| PPARG_HUMAN | 1.83 | -2.89 | 1.50 | n/a | No Hit |
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Motif analysis
No data available
Genetic associations
GTEx eQTL Brain_Anterior_cingulate_cortex_BA24, Brain_Caudate_basal_ganglia, Brain_Cerebellum, Brain_Cortex, Brain_Hippocampus, Brain_Nucleus_accumbens_basal_ganglia, Brain_Putamen_basal_ganglia, Esophagus_Mucosa, Esophagus_Muscularis, Heart_Atrial_Appendage, Nerve_Tibial, Thyroid, Whole_Blood