rs6053197 chr20:5202707 G>T

Sequence
agaacagactacagtgggccaagg[G/T]tgaaagcagggtgatcagagagga
ASB in cell types
HepG2 (hepatoblastoma)
ASB for transcription factors
PPARG_HUMAN

Color scale

color scale ref
-log10 FDR of Ref (G) ASB
color scale alt
-log10 FDR of Alt (T) ASB

Details

Uniprot ID
Effect size Ref
Effect size Alt
FDR Ref
FDR Alt
Mean BAD
Motif fold change
Motif concordance
PPARG_HUMAN 1.64 -2.81 0.011.00 1.50 -3.14 Concordant
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Motif analysis

PPARG_HUMAN Concordant
PPARG_HUMAN pic

Genetic associations

GRASP diastolic blood pressure (dbp) prop taste detection threshold urinary albumin-to-creatinine ratio
GTEx eQTL Brain_Caudate_basal_ganglia Brain_Cerebellum Brain_Cortex Brain_Hippocampus Brain_Nucleus_accumbens_basal_ganglia Brain_Putamen_basal_ganglia Brain_Substantia_nigra Nerve_Tibial Thyroid Whole_Blood

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