rs6053563 chr20:5645697 C>G
- Sequence
tgttgttctctttttattcctcct[C/G]taagaccaaagtcccatgagatgg
- ASB in cell types
- GM12878 (female B-cells lymphoblastoid cell line) germinal center B-cells
- ASB for transcription factors
- FOXK2_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (C) ASB
-log10 FDR of Alt (G) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| FOXK2_HUMAN | 2.62 | -4.62 | 1.50 | n/a | n/a |
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Motif analysis
No data available
Genetic associations
GRASP advanced age-related macular degeneration, advanced age-related macular degeneration (choroidal neovascularization) vs. no amd, aortic valve calcium, infant head circumference