rs6053839 chr20:675413 C>T
- Sequence
cctcgtggcccaagctggggaggg[C/T]cccagctcccctcgcctcttctcc
- ASB in cell types
- HEK293 (embryonic kidney)
- ASB for transcription factors
- GLIS1_HUMAN ZBT26_HUMAN EGR2_HUMAN ZFHX2_HUMAN
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-log10 FDR of Ref (C) ASB
-log10 FDR of Alt (T) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| GLIS1_HUMAN | 1.77 | n/a | 2.00 | n/a | n/a | |||
| ZBT26_HUMAN | 2.08 | n/a | 2.00 | n/a | n/a | |||
| EGR2_HUMAN | 2.72 | -4.94 | 2.00 | -0.83 | Weak Concordant | |||
| ZFHX2_HUMAN | 1.45 | n/a | 3.00 | n/a | n/a |
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Motif analysis
