rs6055462 chr20:8019203 G>C
- Sequence
cgcgcatgcgcggcgcgagcggcc[G/C]ggccccacagccgcaggtcgttgg
- ASB in cell types
- primary B-CLL cells testis
- ASB for transcription factors
- CTCF_HUMAN BRD4_HUMAN SPT5H_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (G) ASB
-log10 FDR of Alt (C) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| CTCF_HUMAN | 0.68 | 1.14 | 1.20 | n/a | No Hit | |||
| BRD4_HUMAN | 2.71 | 0.47 | 1.28 | n/a | n/a | |||
| SPT5H_HUMAN | -0.04 | 1.66 | 1.00 | n/a | n/a |
Items per page:
1 – 3 of 3
Motif analysis
No data available
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Artery_Aorta, Artery_Tibial, Cells_Cultured_fibroblasts, Esophagus_Mucosa, Heart_Left_Ventricle, Minor_Salivary_Gland, Nerve_Tibial, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Testis