rs6058943 chr20:32894295 T>C
- Sequence
ttggtaacaggcccctggcaggct[T/C]gttggggcagcgtcccctgctggc
- ASB in cell types
- HepG2 (hepatoblastoma) LUHMES (lund human mesencephalic cells) GBM39 (Human brain tumor) HCT-116-RAD21-mAC
- ASB for transcription factors
- STAG1_HUMAN CTCF_HUMAN
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-log10 FDR of Ref (T) ASB
-log10 FDR of Alt (C) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| STAG1_HUMAN | 0.13 | 1.18 | 1.11 | n/a | n/a | |||
| CTCF_HUMAN | 0.77 | 0.83 | 1.46 | n/a | No Hit |
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Motif analysis
No data available
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Artery_Tibial, Colon_Transverse, Esophagus_Mucosa, Esophagus_Muscularis, Heart_Left_Ventricle, Lung, Muscle_Skeletal, Nerve_Tibial, Pancreas, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Testis, Thyroid, Whole_Blood