rs6059498 chr20:33859476 T>C
- Sequence
ttccggtctggcctgggcaccccg[T/C]ctcagaaactgcttccttccttcc
- ASB in cell types
- ICN12 (primary pre-B acute lymphomablastic leukemia) ARP-1(Plasma cell myeloma)
- ASB for transcription factors
- PBX1_HUMAN IKZF1_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (T) ASB
-log10 FDR of Alt (C) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| PBX1_HUMAN | -2.60 | 1.67 | 1.33 | n/a | No Hit | |||
| IKZF1_HUMAN | -2.85 | 1.73 | 1.50 | n/a | No Hit |
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Motif analysis
No data available
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Artery_Tibial, Esophagus_Muscularis, Heart_Atrial_Appendage, Muscle_Skeletal, Skin_Sun_Exposed_Lower_leg, Testis, Whole_Blood