rs6060262 chr20:31605268 A>C
- Sequence
ggccgtggcgtgtttataaaagac[A/C]agctgtggctccgcactctcattc
- ASB in cell types
- GM12878 (female B-cells lymphoblastoid cell line) HepG2 (hepatoblastoma) MCF7 (Invasive ductal breast carcinoma) HCASMC (Human coronary artery smooth muscle cells)
- ASB for transcription factors
- TYY1_HUMAN FOXK2_HUMAN ZN444_HUMAN TCF21_HUMAN
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-log10 FDR of Ref (A) ASB
-log10 FDR of Alt (C) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| TYY1_HUMAN | 2.28 | -0.64 | 2.00 | n/a | No Hit | |||
| FOXK2_HUMAN | 2.87 | 1.29 | 1.17 | n/a | n/a | |||
| ZN444_HUMAN | -2.92 | 2.81 | 1.00 | n/a | n/a | |||
| TCF21_HUMAN | 1.83 | -1.88 | 4.00 | n/a | n/a | |||
| AGO2_HUMAN | 0.30 | 1.49 | 1.33 | n/a | n/a |
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Motif analysis
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Adipose_Visceral_Omentum, Artery_Aorta, Artery_Coronary, Artery_Tibial, Brain_Caudate_basal_ganglia, Brain_Cortex, Brain_Frontal_Cortex_BA9, Brain_Hippocampus, Breast_Mammary_Tissue, Cells_Cultured_fibroblasts, Colon_Sigmoid, Colon_Transverse, Esophagus_Gastroesophageal_Junction, Esophagus_Mucosa, Esophagus_Muscularis, Heart_Atrial_Appendage, Heart_Left_Ventricle, Lung, Minor_Salivary_Gland, Muscle_Skeletal, Nerve_Tibial, Pituitary, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Spleen, Testis, Thyroid, Vagina, Whole_Blood