rs6061398 chr20:62009750 G>A
- Sequence
ccgacactacgagtgtgtacaaac[G/A]ggtggcgctgctgttttacataca
- ASB in cell types
- GM19238 (female B-cells lymphoblastoid cell lines) foreskin keratinocyte
- ASB for transcription factors
- CTCF_HUMAN STAG1_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (G) ASB
-log10 FDR of Alt (A) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| CTCF_HUMAN | -3.43 | 2.98 | 2.50 | 2.37 | Concordant | |||
| STAG1_HUMAN | n/a | 3.74 | 1.00 | n/a | n/a |
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Motif analysis
