rs6061539 chr20:62450091 C>T
- Sequence
ccactcctgccgctgggggctgac[C/T]gtggcaccaactcttttttccatg
- ASB in cell types
- HeLa (cervical adenocarcinoma) GM02630 (Fanconi anemi) GM19238 (female B-cells lymphoblastoid cell lines)
- ASB for transcription factors
- CTCF_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (C) ASB
-log10 FDR of Alt (T) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| CTCF_HUMAN | -0.29 | 1.95 | 1.83 | -1.39 | Weak Discordant |
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Motif analysis
