rs6062868 chr20:63254850 C>T
- Sequence
cacctgctcccgccgtgcgccctc[C/T]ggcgtgagatccccatcaaccttc
- ASB in cell types
- neural progenitors bipolar neuron GM12892 (female B-cells lymphoblastoid cell line) RH41(Alveolar rhabdomyosarcoma)
- ASB for transcription factors
- CTCF_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (C) ASB
-log10 FDR of Alt (T) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| CTCF_HUMAN | -0.72 | 3.85 | 1.69 | 3.00 | Concordant |
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Motif analysis
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Adipose_Visceral_Omentum, Brain_Cerebellar_Hemisphere, Brain_Cerebellum, Brain_Cortex, Breast_Mammary_Tissue, Cells_Cultured_fibroblasts, Colon_Sigmoid, Colon_Transverse, Esophagus_Gastroesophageal_Junction, Esophagus_Muscularis, Lung, Nerve_Tibial, Testis, Thyroid, Whole_Blood