rs6063493 chr20:50246885 T>G

Sequence
ggcaatgagcccattgccacgggg[T/G]acggcggagcttggatgctgcacc
ASB in cell types
MCF7 (Invasive ductal breast carcinoma) 22RV1 (prostate carcinoma)
ASB for transcription factors
ESR1_HUMAN ANDR_HUMAN
Search SNPs nearby
View in UCSC Genome Browser
View in PheLiGe

Color scale

color scale ref
-log10 FDR of Ref (T) ASB
color scale alt
-log10 FDR of Alt (G) ASB

Details

Uniprot ID
Effect size Ref
Effect size Alt
FDR Ref
FDR Alt
Mean BAD
Motif fold change
Motif concordance
ESR1_HUMAN -0.55 2.05 0.910.02 3.20 n/a No Hit
ANDR_HUMAN 2.12 -0.52 0.050.96 2.17 n/a No Hit
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Motif analysis

No data available

Genetic associations

GRASP advanced age-related macular degeneration (geographic atrophy),  hdl cholesterol,  total cholesterol

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