rs6063997 chr20:53787017 T>C
- Sequence
ttgacattttgggtggataattct[T/C]tgttttgtgttgctgtcgtgtgcc
- ASB in cell types
- MCF7 (Invasive ductal breast carcinoma) MCF7 TamR (invasive ductal breast carcinoma Tamoxifen resistant) MDA-MB-134 (invasive lobular breast carcinoma) MCF7L-P(immortalized breast epithelial cell line)
- ASB for transcription factors
- FOXA1_HUMAN ESR1_HUMAN TLE3_HUMAN TRPS1_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (T) ASB
-log10 FDR of Alt (C) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| FOXA1_HUMAN | 1.09 | 2.55 | 1.89 | n/a | No Hit | |||
| ESR1_HUMAN | 0.65 | 3.10 | 2.88 | n/a | No Hit | |||
| TLE3_HUMAN | n/a | 3.77 | 3.00 | n/a | n/a | |||
| TRPS1_HUMAN | n/a | 2.83 | 4.00 | n/a | n/a | |||
| SMRC1_HUMAN | 1.98 | -0.01 | 1.07 | n/a | n/a |
Items per page:
1 – 5 of 5