rs606671 chr11:114400485 T>C

Sequence
ggaagagccagaagccgccttgcc[T/C]ttaacgaggggtatcctggcgagc
ASB in cell types
HepG2 (hepatoblastoma) CD14+ monocytes HEK293 (embryonic kidney) breast tumor
ASB for transcription factors
TYY1_HUMAN ESR1_HUMAN STAT1_HUMAN
Search SNPs nearby
View in UCSC Genome Browser
View in PheLiGe

Color scale

color scale ref
-log10 FDR of Ref (T) ASB
color scale alt
-log10 FDR of Alt (C) ASB

Details

Uniprot ID
Effect size Ref
Effect size Alt
FDR Ref
FDR Alt
Mean BAD
Motif fold change
Motif concordance
TYY1_HUMAN 1.90 -0.26 5.5·10-71.00 1.33 n/a No Hit
ESR1_HUMAN 3.07 -5.41 1.2·10-31.00 2.00 2.44 Discordant
STAT1_HUMAN 2.54 0.45 7.1·10-31.00 2.00 n/a No Hit
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Motif analysis

ESR1_HUMAN Discordant
ESR1_HUMAN pic

Genetic associations

GRASP hdl cholesterol,  ldl cholesterol,  urinary albumin-to-creatinine ratio
GTEx eQTL Adipose_Subcutaneous,  Artery_Aorta,  Artery_Tibial,  Cells_Cultured_fibroblasts,  Colon_Sigmoid,  Esophagus_Gastroesophageal_Junction,  Esophagus_Mucosa,  Esophagus_Muscularis,  Lung,  Muscle_Skeletal,  Nerve_Tibial,  Skin_Sun_Exposed_Lower_leg

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