rs6066825 chr20:48723580 A>G

Sequence
atctcctacttgataaacacagct[A/G]gagaccaaggaaacaaggcgtgcc
ASB in cell types
brain prefrontal cortex region tissues BEAS-2B (bronchial epithelium)
ASB for transcription factors
OLIG2_HUMAN GCR_HUMAN PAX2_HUMAN EP300_HUMAN
Search SNPs nearby
View in UCSC Genome Browser
View in PheLiGe

Color scale

color scale ref
-log10 FDR of Ref (A) ASB
color scale alt
-log10 FDR of Alt (G) ASB

Details

Uniprot ID
Effect size Ref
Effect size Alt
FDR Ref
FDR Alt
Mean BAD
Motif fold change
Motif concordance
OLIG2_HUMAN -3.60 3.23 1.002.1·10-5 1.00 4.23 Concordant
GCR_HUMAN n/a 2.08 1.000.03 2.00 n/a No Hit
PAX2_HUMAN n/a 1.44 1.000.03 6.00 n/a n/a
EP300_HUMAN -0.39 1.53 1.000.03 1.50 n/a n/a
FOXA1_HUMAN 0.73 1.43 0.950.05 3.00 n/a No Hit
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Motif analysis

OLIG2_HUMAN Concordant
OLIG2_HUMAN pic

Genetic associations

EMBL-EBI colorectal cancer,  colorectal cancer or advanced adenoma
GRASP diastolic blood pressure (dbp),  hypertension (early onset hypertension),  infant head circumference,  stabilized warfarin dose,  systolic blood pressure (sbp)
GTEx eQTL Artery_Tibial,  Esophagus_Muscularis,  Whole_Blood

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