rs6067445 chr20:50434736 C>G

Sequence
ccaataaaactttattgacaaaaa[C/G]cacacgctgagccagatttggccc
ASB in cell types
MCF7 (Invasive ductal breast carcinoma) HEK293-A HepG2 (hepatoblastoma) MCF7 WS8 cells
ASB for transcription factors
TLE3_HUMAN ESR1_HUMAN MEF2B_HUMAN
Search SNPs nearby
View in UCSC Genome Browser
View in PheLiGe

Color scale

color scale ref
-log10 FDR of Ref (C) ASB
color scale alt
-log10 FDR of Alt (G) ASB

Details

Uniprot ID
Effect size Ref
Effect size Alt
FDR Ref
FDR Alt
Mean BAD
Motif fold change
Motif concordance
TLE3_HUMAN 2.21 n/a 4.1·10-31.00 3.00 n/a n/a
ESR1_HUMAN 0.95 0.02 5.9·10-31.00 3.31 n/a No Hit
MEF2B_HUMAN 1.75 -0.06 7.6·10-31.00 1.50 n/a No Hit
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Motif analysis

No data available

Genetic associations

GTEx eQTL Brain_Hippocampus,  Skin_Sun_Exposed_Lower_leg,  Testis

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