rs6070417 chr20:58294712 G>C

Sequence
gcaacatgcctggcctctacccac[G/C]acttgccagagcactccctcccca
ASB in cell types
MCF7 (Invasive ductal breast carcinoma) MDA-MB-134 (invasive lobular breast carcinoma)
ASB for transcription factors
FOXA1_HUMAN ESR1_HUMAN
Search SNPs nearby
View in UCSC Genome Browser
View in PheLiGe

Color scale

color scale ref
-log10 FDR of Ref (G) ASB
color scale alt
-log10 FDR of Alt (C) ASB

Details

Uniprot ID
Effect size Ref
Effect size Alt
FDR Ref
FDR Alt
Mean BAD
Motif fold change
Motif concordance
FOXA1_HUMAN 1.70 0.23 1.5·10-31.00 2.95 n/a No Hit
ESR1_HUMAN 1.81 -0.10 6.8·10-31.00 3.91 n/a No Hit
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Motif analysis

No data available

Genetic associations

GRASP birth weight,  hdl cholesterol,  waist hip ratio
GTEx eQTL Cells_Cultured_fibroblasts,  Lung,  Muscle_Skeletal,  Nerve_Tibial,  Skin_Not_Sun_Exposed_Suprapubic,  Skin_Sun_Exposed_Lower_leg,  Testis

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