rs6070740 chr20:38601843 C>A
- Sequence
gagggtgtctgggaactgggtgcg[C/A]cacgggggccctacctcactcctc
- ASB in cell types
- HEK293 (embryonic kidney)
- ASB for transcription factors
- SP2_HUMAN PRD10_HUMAN CTCF_HUMAN ZIC2_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (C) ASB
-log10 FDR of Alt (A) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| SP2_HUMAN | 2.71 | n/a | 2.00 | -0.46 | Weak Concordant | |||
| PRD10_HUMAN | 3.30 | n/a | 2.00 | n/a | n/a | |||
| CTCF_HUMAN | 1.53 | 0.70 | 1.42 | n/a | No Hit | |||
| ZIC2_HUMAN | 2.42 | n/a | 2.50 | n/a | n/a | |||
| JUN_HUMAN | 1.63 | 0.64 | 3.00 | n/a | No Hit |
Items per page:
1 – 5 of 5
Motif analysis
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Adipose_Visceral_Omentum, Artery_Tibial, Breast_Mammary_Tissue, Cells_Cultured_fibroblasts, Colon_Sigmoid, Colon_Transverse, Esophagus_Gastroesophageal_Junction, Esophagus_Mucosa, Esophagus_Muscularis, Heart_Atrial_Appendage, Lung, Minor_Salivary_Gland, Muscle_Skeletal, Nerve_Tibial, Pancreas, Pituitary, Prostate, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Spleen, Stomach, Testis, Thyroid, Vagina, Whole_Blood