rs6072357 chr20:41391719 C>T

Sequence
aggtggcggggcagagagagagag[C/T]gcgcctcaatggctttcaatagtt
ASB in cell types
foreskin keratinocyte
ASB for transcription factors
PAX2_HUMAN CTCF_HUMAN ZFX_HUMAN
Search SNPs nearby
View in UCSC Genome Browser
View in PheLiGe

Color scale

color scale ref
-log10 FDR of Ref (C) ASB
color scale alt
-log10 FDR of Alt (T) ASB

Details

Uniprot ID
Effect size Ref
Effect size Alt
FDR Ref
FDR Alt
Mean BAD
Motif fold change
Motif concordance
PAX2_HUMAN 2.59 -5.02 1.3·10-31.00 2.00 n/a n/a
CTCF_HUMAN 1.49 0.14 0.011.00 1.42 n/a No Hit
ZFX_HUMAN 1.86 -1.61 0.021.00 1.00 n/a No Hit
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Motif analysis

No data available

Genetic associations

GTEx eQTL Brain_Amygdala,  Brain_Anterior_cingulate_cortex_BA24,  Brain_Caudate_basal_ganglia,  Brain_Hypothalamus,  Brain_Nucleus_accumbens_basal_ganglia,  Brain_Putamen_basal_ganglia,  Cells_Cultured_fibroblasts,  Esophagus_Mucosa,  Esophagus_Muscularis,  Liver,  Skin_Sun_Exposed_Lower_leg,  Small_Intestine_Terminal_Ileum,  Spleen

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