rs6072590 chr20:42003585 T>C
- Sequence
aaagtgtgaaagtactttccatta[T/C]gtcatcctgaatctgatttaataa
- ASB in cell types
- GM12878 (female B-cells lymphoblastoid cell line) MCF7 (Invasive ductal breast carcinoma)
- ASB for transcription factors
- ATF2_HUMAN ATF7_HUMAN CREB1_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (T) ASB
-log10 FDR of Alt (C) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| ATF2_HUMAN | n/a | 4.12 | 1.50 | 7.22 | Concordant | |||
| ATF7_HUMAN | n/a | 3.83 | 1.50 | n/a | n/a | |||
| CREB1_HUMAN | -1.22 | 3.43 | 1.50 | 7.22 | Concordant |
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Motif analysis
