rs6073279 chr20:44001719 A>G
- Sequence
ctctgtgccagcacctattttaac[A/G]gtgctgagggacagggagggaggt
- ASB in cell types
- GM12878 (female B-cells lymphoblastoid cell line) HT1080 (fibrosarcoma)
- ASB for transcription factors
- PKNX1_HUMAN SSRP1_HUMAN CTCF_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (A) ASB
-log10 FDR of Alt (G) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| PKNX1_HUMAN | 2.06 | -1.84 | 1.00 | n/a | No Hit | |||
| SSRP1_HUMAN | 3.02 | -3.16 | 1.00 | n/a | n/a | |||
| CTCF_HUMAN | 1.24 | -0.05 | 1.04 | n/a | No Hit |
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