rs6073534 chr20:44736863 C>T
- Sequence
tgtggccatgtgactcaatcttta[C/T]caataaaatatgaagggaagtgac
- ASB in cell types
- MCF7 (Invasive ductal breast carcinoma) GM12878 (female B-cells lymphoblastoid cell line) HepG2 (hepatoblastoma) adult erythroblasts
- ASB for transcription factors
- GABPA_HUMAN USF2_HUMAN HCFC1_HUMAN SUZ12_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (C) ASB
-log10 FDR of Alt (T) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| GABPA_HUMAN | 1.84 | -1.26 | 1.62 | n/a | No Hit | |||
| USF2_HUMAN | 2.71 | -1.44 | 1.78 | n/a | No Hit | |||
| HCFC1_HUMAN | 2.70 | 2.31 | 2.00 | n/a | n/a | |||
| SUZ12_HUMAN | 2.81 | -4.81 | 1.50 | n/a | n/a | |||
| USF1_HUMAN | 1.77 | -1.15 | 1.33 | n/a | No Hit |
Items per page:
1 – 5 of 7
Motif analysis
No data available
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Adipose_Visceral_Omentum, Artery_Aorta, Artery_Tibial, Brain_Anterior_cingulate_cortex_BA24, Brain_Caudate_basal_ganglia, Brain_Cerebellar_Hemisphere, Brain_Cerebellum, Brain_Cortex, Brain_Frontal_Cortex_BA9, Brain_Hypothalamus, Brain_Nucleus_accumbens_basal_ganglia, Brain_Putamen_basal_ganglia, Breast_Mammary_Tissue, Colon_Transverse, Esophagus_Gastroesophageal_Junction, Esophagus_Mucosa, Esophagus_Muscularis, Heart_Atrial_Appendage, Heart_Left_Ventricle, Lung, Muscle_Skeletal, Nerve_Tibial, Pancreas, Pituitary, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Stomach, Testis, Thyroid